STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1891PFAM: PT repeat-containing protein; KEGG: pfa:PFF0385c hypothetical protein. (330 aa)    
Predicted Functional Partners:
Cphy_1890
Hypothetical protein.
      
0.773
Cphy_0721
KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted).
  
     0.651
Cphy_0718
KEGG: pin:Ping_0445 membrane protein involved in colicin uptake-like protein.
  
     0.553
Cphy_1694
PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical glycine-rich protein.
 
 
 0.530
scpA
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.481
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
 
 0.476
Cphy_1893
PFAM: protein of unknown function DUF205; KEGG: fnu:FN0537 hypothetical membrane-spanning protein; Belongs to the PlsY family.
       0.466
Cphy_1911
Hypothetical protein; KEGG: mvn:Mevan_0087 superfamily I DNA and RNA helicase and helicase subunits-like protein.
  
  
 0.459
Cphy_2580
Non-specific serine/threonine protein kinase; KEGG: cth:Cthe_2451 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases.
   
 
 0.456
Cphy_1892
PFAM: Monogalactosyldiacylglycerol synthase; KEGG: cpf:CPF_0710 putative monogalactosyldiacylglycerol synthase.
  
    0.454
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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