STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1895TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cbe:Cbei_0463 hemerythrin-like metal-binding protein. (129 aa)    
Predicted Functional Partners:
Cphy_1653
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC02359 hemerythrin-like domain protein DcrH.
  
     0.745
Cphy_1894
PFAM: cyclase family protein; KEGG: gur:Gura_0174 cyclase family protein.
       0.732
Cphy_0262
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.
  
  
 0.630
Cphy_2692
PFAM: type IV pilus assembly PilZ; KEGG: csc:Csac_1280 type IV pilus assembly PilZ.
  
     0.527
Cphy_0304
KEGG: cth:Cthe_2245 hypothetical protein.
  
     0.444
Cphy_1892
PFAM: Monogalactosyldiacylglycerol synthase; KEGG: cpf:CPF_0710 putative monogalactosyldiacylglycerol synthase.
       0.415
Cphy_1893
PFAM: protein of unknown function DUF205; KEGG: fnu:FN0537 hypothetical membrane-spanning protein; Belongs to the PlsY family.
       0.415
Cphy_0303
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: csc:Csac_1662 anti-sigma-28 factor, FlgM.
 
     0.411
Cphy_3914
PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 protein of unknown function DUF327.
  
     0.406
Cphy_3293
KEGG: cno:NT01CX_1368 hypothetical protein.
  
     0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.