STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1905PFAM: protein of unknown function DUF1121; KEGG: ckl:CKL_1828 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Cphy_0969
Hypothetical protein; KEGG: cpr:CPR_0544 cysteine-rich domain family.
  
 
 0.757
Cphy_3558
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.511
Cphy_0603
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase.
     
 0.487
Cphy_1903
PFAM: Chromate transporter; KEGG: bth:BT_1736 chromate transport protein.
       0.453
Cphy_1904
PFAM: Chromate transporter; KEGG: ctc:CTC00660 chromate transport protein.
       0.453
Cphy_1906
PFAM: Domain of unknown function DUF1848; KEGG: bth:BT_1910 hypothetical protein.
       0.448
Cphy_2730
PFAM: polysaccharide deacetylase; KEGG: cac:CAC0358 predicted xylanase/chitin deacetylase.
  
    0.447
Cphy_2660
PFAM: Aldose 1-epimerase; KEGG: dge:Dgeo_2023 aldose 1-epimerase.
  
    0.427
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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