STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1907PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_2119 major facilitator superfamily MFS_1. (469 aa)    
Predicted Functional Partners:
Cphy_2730
PFAM: polysaccharide deacetylase; KEGG: cac:CAC0358 predicted xylanase/chitin deacetylase.
 
     0.500
Cphy_1918
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein.
  
     0.452
Cphy_2848
PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4.
 
    0.445
Cphy_3396
Glycoside hydrolase family 4; Alpha-galacturonidase able to catalyze the hydrolysis of the chromogenic substrate p-nitrophenyl-alpha-D-galacturonic acid (pNPalphaGalUA). It is probable that alpha-1,4-di-galacturonate (GalUA(2)) is the naturally occurring substrate.
 
    0.445
Cphy_1906
PFAM: Domain of unknown function DUF1848; KEGG: bth:BT_1910 hypothetical protein.
       0.426
Cphy_1618
KEGG: mgr:MGG_03407 hypothetical protein Pfam: Glyco_hydro_67N.
 
     0.407
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.