Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1918PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein. (557 aa)    
Predicted Functional Partners:
Cphy_1917
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BG11788 putative multiple sugar transport system permease protein.
 
   0.810
Cphy_1916
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 putative membrane protein; RBL03398.
 
    0.714
Cphy_1919
PFAM: glycosyl hydrolase family 88; KEGG: bsu:BG12852 similar to hypothetical proteins.
 
    0.704
Cphy_0193
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related.
  
     0.630
Cphy_2265
PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1046 extracellular solute-binding protein, family 1.
  
     0.602
Cphy_2189
PFAM: glutaredoxin 2; KEGG: mhu:Mhun_3231 cytochrome c biogenesis protein, transmembrane region.
  
   
 0.593
Cphy_1618
KEGG: mgr:MGG_03407 hypothetical protein Pfam: Glyco_hydro_67N.
  
     0.579
Cphy_1708
KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
  
     0.558
Cphy_1723
PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
  
     0.556
Cphy_2193
PFAM: extracellular solute-binding protein family 1; KEGG: oih:OB3210 putative multiple sugar transport system substrate-binding protein.
  
     0.549
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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