Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1919PFAM: glycosyl hydrolase family 88; KEGG: bsu:BG12852 similar to hypothetical proteins. (345 aa)    
Predicted Functional Partners:
Cphy_1918
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein.
 
    0.704
Cphy_2729
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cbe:Cbei_0450 xylose isomerase domain protein TIM barrel.
 
    0.672
Cphy_1920
Conserved hypothetical protein; Reversibly phosphorolyzes beta-D-galactosyl-(1->4)-L-rhamnose to form alpha-D-galactose 1-phosphate and L-rhamnose. Does not phosphorolyze galacto-N-biose or lacto-N-biose. In the reverse reaction, has the highest activity toward L-rhamnose, also has activity toward L-mannose, and low activity toward L-lyxose, D-glucose, 2-deoxy- D-glucose and D-galactose.
 
     0.669
Cphy_1618
KEGG: mgr:MGG_03407 hypothetical protein Pfam: Glyco_hydro_67N.
 
     0.662
Cphy_2736
PFAM: glycoside hydrolase family 28; KEGG: amt:Amet_0899 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.656
Cphy_2735
PFAM: lipolytic protein G-D-S-L family; KEGG: bld:BLi04100 hypothetical protein.
 
    0.651
Cphy_3080
KEGG: bsu:BG12861 hypothetical protein.
 
  
 0.615
Cphy_0343
PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein.
 
  
 0.611
Cphy_3217
PFAM: glycoside hydrolase family 28; KEGG: fjo:Fjoh_3114 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.607
Cphy_2737
PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88.
  
   
 0.511
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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