STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1920Conserved hypothetical protein; Reversibly phosphorolyzes beta-D-galactosyl-(1->4)-L-rhamnose to form alpha-D-galactose 1-phosphate and L-rhamnose. Does not phosphorolyze galacto-N-biose or lacto-N-biose. In the reverse reaction, has the highest activity toward L-rhamnose, also has activity toward L-mannose, and low activity toward L-lyxose, D-glucose, 2-deoxy- D-glucose and D-galactose. (722 aa)    
Predicted Functional Partners:
Cphy_0573
PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein.
 
     0.764
Cphy_1792
PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein.
 
     0.764
Cphy_0575
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0087 permease protein.
 
     0.719
Cphy_0574
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0086 putative permease protein.
 
     0.715
Cphy_1919
PFAM: glycosyl hydrolase family 88; KEGG: bsu:BG12852 similar to hypothetical proteins.
 
     0.665
Cphy_1921
Hypothetical protein.
       0.524
Cphy_0570
KEGG: cpe:CPE1200 hypothetical protein.
 
   
 0.514
Cphy_1019
Kojibiose phosphorylase; Phosphorylase showing strict alpha-1,3-regioselectivity and producing 3-O-alpha-D-glucopyranosyl-L-rhamnopyranose. Specific for L- rhamnose as acceptor and beta-D-glucose 1-phosphate as donor. Does not phosphorylate alpha,alpha-trehalose, kojibiose, nigerose, or maltose.
      
 0.505
Cphy_1874
Kojibiose phosphorylase; Catalyzes the reversible phosphorolysis of nigerose. Also shows a weak activity on kojibiose; Belongs to the glycosyl hydrolase 65 family.
      
 0.505
Cphy_0572
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_2212 transcriptional regulator, AraC family.
 
     0.495
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.