Cphy_1924 protein (Lachnoclostridium phytofermentans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Cphy_1924

PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin). (128 aa)

Predicted Functional Partners:

Cphy_1923

0.737

Cphy_0262

0.654

Cphy_1570

0.641

Cphy_2780

0.638

Cphy_0083

0.588

Cphy_0524

0.552

Cphy_3786

0.498

Your Current Organism:

Lachnoclostridium phytofermentans

NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Cphy_0083	Cphy_0262	PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.	0.951
Cphy_0083	Cphy_0524	PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.	PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin.	0.736
Cphy_0083	Cphy_1570	PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.	Ferritin Dps family protein; Iron-storage protein.	0.556
Cphy_0083	Cphy_1924	PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	0.588
Cphy_0262	Cphy_0083	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.	PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.	0.951
Cphy_0262	Cphy_0524	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.	PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin.	0.543
Cphy_0262	Cphy_1924	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	0.654
Cphy_0262	Cphy_2780	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.	PFAM: Rubrerythrin; KEGG: cdf:CD2845 rubrerythrin.	0.587
Cphy_0524	Cphy_0083	PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin.	PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.	0.736
Cphy_0524	Cphy_0262	PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin.	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.	0.543
Cphy_0524	Cphy_1924	PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin.	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	0.552
Cphy_1570	Cphy_0083	Ferritin Dps family protein; Iron-storage protein.	PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.	0.556
Cphy_1570	Cphy_1924	Ferritin Dps family protein; Iron-storage protein.	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	0.641
Cphy_1570	Cphy_3786	Ferritin Dps family protein; Iron-storage protein.	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_3119 flavin reductase-like, FMN-binding.	0.472
Cphy_1923	Cphy_1924	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pdi:BDI_1057 putative dehydrogenase.	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	0.737
Cphy_1924	Cphy_0083	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.	0.588
Cphy_1924	Cphy_0262	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.	0.654
Cphy_1924	Cphy_0524	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin.	0.552
Cphy_1924	Cphy_1570	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	Ferritin Dps family protein; Iron-storage protein.	0.641
Cphy_1924	Cphy_1923	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin).	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pdi:BDI_1057 putative dehydrogenase.	0.737

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About