STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Cphy_1940PFAM: SCP-like extracellular; KEGG: cdf:CD2681 putative calcium-chelating exported protein. (242 aa)    
Predicted Functional Partners:
Cphy_3368
PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
 
    0.547
Cphy_3367
Cellulase; PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
 
    0.508
Cphy_1259
PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
   0.485
Cphy_3534
PFAM: inner-membrane translocator; KEGG: drm:Dred_2238 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
   0.485
Cphy_0666
Hypothetical protein; KEGG: bvu:BVU_0177 glycoside hydrolase family 28.
  
    0.444
Cphy_1995
KEGG: mac:MA4292 cell surface protein.
  
    0.444
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
   
   0.410
Cphy_1941
PFAM: phospholipid/glycerol acyltransferase; KEGG: cbe:Cbei_0579 phospholipid/glycerol acyltransferase.
  
    0.406
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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