STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1965Membrane protein-like protein; KEGG: tde:TDE1859 hypothetical protein. (456 aa)    
Predicted Functional Partners:
Cphy_1273
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: cac:CAC2659 putative stress-responsive transcriptional regulator PspC.
  
  
 0.605
Cphy_1963
PFAM: transcriptional regulator PadR family protein; KEGG: gtn:GTNG_0307 predicted transcriptional regulator.
 
  
 0.580
Cphy_0422
Hypothetical protein; KEGG: sde:Sde_3902 heavy metal efflux pump CzcA.
 
  
 0.536
Cphy_3672
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: dsy:DSY1913 hypothetical protein.
  
  
 0.514
Cphy_1964
Hypothetical protein.
       0.510
Cphy_0676
Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family.
  
     0.482
Cphy_0452
KEGG: cbf:CLI_0630 hypothetical protein.
  
  
 0.466
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
 
     0.449
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
 
     0.449
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 phosphoribosyl-AMP cyclohydrolase; In the C-terminal section; belongs to the PRA-PH family.
       0.444
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.