STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1970KEGG: bra:BRADO1315 hypothetical protein; putative signal peptide. (366 aa)    
Predicted Functional Partners:
Cphy_1968
PFAM: von Willebrand factor type A; KEGG: bra:BRADO1313 hypothetical protein; putative signal peptide.
 
     0.940
Cphy_1969
KEGG: cdf:CD2337 hypothetical protein.
       0.788
Cphy_2143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tde:TDE0183 ABC transporter, permease protein.
 
  
 0.788
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
    0.765
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
  
     0.763
Cphy_0804
KEGG: mac:MA3471 hypothetical protein.
  
     0.759
Cphy_2029
Hypothetical protein; KEGG: amt:Amet_3803 copper amine oxidase domain protein.
  
     0.759
Cphy_1089
PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein.
  
    0.754
Cphy_1063
Conserved hypothetical protein; KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase.
  
     0.749
Cphy_1155
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpe:CPE1368 hypothetical protein.
  
     0.747
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.