STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1984PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1022 ABC transporter, ATP-binding protein. (295 aa)    
Predicted Functional Partners:
Cphy_1985
KEGG: cbh:CLC_1023 hypothetical protein.
       0.776
Cphy_1408
KEGG: sep:SE0117 ABC transporter (ATP-binding protein).
  
     0.751
Cphy_1983
KEGG: cbf:CLI_1052 hypothetical protein.
       0.567
Cphy_1987
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1692 integral membrane sensor signal transduction histidine kinase.
 
     0.516
Cphy_2078
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein.
 
    
0.499
Cphy_0944
KEGG: dsy:DSY2794 hypothetical protein.
 
   0.489
Cphy_3926
PFAM: ABC transporter related; KEGG: bay:RBAM_009350 YhcH.
 
   
0.470
Cphy_0940
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dsy:DSY2792 hypothetical protein.
  
    0.465
Cphy_1244
PFAM: protein of unknown function DUF214; KEGG: cdf:CD2533 ABC transporter, permease protein.
  
    0.445
Cphy_1279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH.
  
    0.422
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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