STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2002PFAM: YCII-related; KEGG: cpf:CPF_0987 hypothetical protein. (98 aa)    
Predicted Functional Partners:
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 phosphoribosyl-AMP cyclohydrolase; In the C-terminal section; belongs to the PRA-PH family.
  
  
 0.644
Cphy_0983
KEGG: cpe:CPE0798 hypothetical protein.
  
     0.611
Cphy_0968
PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4919 nitroreductase.
 
     0.543
Cphy_1852
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cdf:CD3610 putative glyoxalase.
 
     0.520
Cphy_0082
PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_2324 protein of unknown function DUF1540.
  
     0.511
Cphy_1645
Hypothetical protein; KEGG: cdf:CD3350 putative glycosyl transferase.
  
     0.510
Cphy_2001
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bfs:BF1668 putative ATP-dependent RNA helicase.
       0.479
Cphy_0937
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1553 ABC transporter related.
  
    0.478
Cphy_2048
PFAM: protein of unknown function DUF434; KEGG: cbe:Cbei_1509 protein of unknown function DUF434.
  
     0.450
Cphy_1032
PFAM: PfkB domain protein; KEGG: cbh:CLC_1712 kinase, PfkB family.
  
     0.418
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.