STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2014PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor; Belongs to the serpin family. (420 aa)    
Predicted Functional Partners:
Cphy_0721
KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted).
  
  0.851
Cphy_3883
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
    
  0.781
Cphy_2013
PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor; Belongs to the serpin family.
 
    
0.606
Cphy_1084
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: amt:Amet_4762 peptidase M1, membrane alanine aminopeptidase-like protein.
   
 0.572
Cphy_2117
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_0063 rubredoxin-type Fe(Cys)4 protein.
  
     0.462
Cphy_2023
PFAM: band 7 protein; KEGG: mlo:mll0592 hypothetical protein.
  
     0.439
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.