STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2035PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1831 ABC transporter, ATP-binding protein. (514 aa)    
Predicted Functional Partners:
Cphy_2036
PFAM: inner-membrane translocator; KEGG: cpr:CPR_1550 ABC transporter (permease proteins)-like protein lmo1390; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
Cphy_2037
PFAM: inner-membrane translocator; KEGG: bcy:Bcer98_2440 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
Cphy_2034
PFAM: basic membrane lipoprotein; KEGG: cpf:CPF_1832 lipoprotein, BMP family.
 
 
 0.981
Cphy_0757
PFAM: inner-membrane translocator; KEGG: dsy:DSY1169 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.974
Cphy_0758
PFAM: inner-membrane translocator; KEGG: dsy:DSY1168 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.974
Cphy_3266
PFAM: inner-membrane translocator; KEGG: dsy:DSY1168 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.974
Cphy_3267
PFAM: inner-membrane translocator; KEGG: dsy:DSY1169 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.974
Cphy_0767
PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0398 branched-chain amino acid transport system / permease component.
 
 
 0.973
Cphy_0766
PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0399 branched-chain amino acid transport system / permease component.
 
 
 0.972
Cphy_0755
PFAM: basic membrane lipoprotein; KEGG: dsy:DSY1171 hypothetical protein.
 
 
 0.967
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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