STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2039Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein. (306 aa)    
Predicted Functional Partners:
Cphy_3713
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein.
  
     0.630
Cphy_2040
KEGG: ckl:CKL_1132 hypothetical protein.
       0.529
Cphy_1526
PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_2701 GCN5-related N-acetyltransferase.
 
     0.527
Cphy_1870
KEGG: dsy:DSY4364 hypothetical protein.
 
    0.518
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.509
Cphy_1863
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ckl:CKL_2305 hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.479
Cphy_2041
PFAM: GCN5-related N-acetyltransferase; KEGG: pap:PSPA7_2796 acetyltransferase, GNAT family.
 
     0.445
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.445
Cphy_3235
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein.
 
    0.432
Cphy_0133
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
  
 0.414
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.