STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2040KEGG: ckl:CKL_1132 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Cphy_2039
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein.
       0.529
Cphy_2041
PFAM: GCN5-related N-acetyltransferase; KEGG: pap:PSPA7_2796 acetyltransferase, GNAT family.
       0.451
Cphy_2042
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cbf:CLI_0810 putative transcriptional regulator.
       0.419
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.