STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2052PFAM: inner-membrane translocator; KEGG: fnu:FN1896 ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family. (489 aa)    
Predicted Functional Partners:
Cphy_2054
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fno:Fnod_0051 ABC transporter related.
 
 
 0.967
Cphy_2055
KEGG: fno:Fnod_0052 conserved hypothetical lipoprotein.
 
  
 0.919
Cphy_2053
PFAM: inner-membrane translocator; KEGG: fnu:FN1897 ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
    
0.839
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
   
  
 0.500
Cphy_0580
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
  
 
 0.497
Cphy_1134
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
  
 
 0.497
Cphy_1586
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gtn:GTNG_1800 L-arabinose transport, ATP binding protein.
  
 
 0.497
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 
 0.497
Cphy_2242
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN1166 galactoside transport ATP-binding protein mglA.
  
 
 0.497
Cphy_3279
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
  
 
 0.497
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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