Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2063Hypothetical protein; KEGG: aau:AAur_2329 putative ABC transporter, integral membrane protein. (288 aa)    
Predicted Functional Partners:
Cphy_2062
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit.
 
  
 0.839
Cphy_3255
PFAM: nitroreductase; KEGG: mth:MTH933 hypothetical protein.
 
    0.592
Cphy_0192
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: ppe:PEPE_1650 ABC-type antimicrobial peptide transport system, ATPase component.
 
  
 0.538
Cphy_0193
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related.
  
   
 0.485
Cphy_1863
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ckl:CKL_2305 hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.483
Cphy_3580
PFAM: protein of unknown function DUF181; KEGG: abu:Abu_1484 conserved hypothetical protein.
  
  
 0.473
Cphy_1141
KEGG: amt:Amet_3459 hypothetical protein.
  
     0.469
Cphy_2189
PFAM: glutaredoxin 2; KEGG: mhu:Mhun_3231 cytochrome c biogenesis protein, transmembrane region.
  
     0.448
Cphy_0186
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1248 ABC transporter, ATP-binding protein.
 
  
 0.438
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
    0.428
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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