Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2078PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein. (227 aa)    
Predicted Functional Partners:
Cphy_2079
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_0540 protein of unknown function DUF214.
 
 
 0.993
Cphy_2077
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_0538 periplasmic sensor signal transduction histidine kinase.
 
   0.852
Cphy_1244
PFAM: protein of unknown function DUF214; KEGG: cdf:CD2533 ABC transporter, permease protein.
 
   0.810
Cphy_0114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0410 ABC-type multidrug transport system, ATPase component.
 
    
0.748
Cphy_2076
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_0537 two component transcriptional regulator, winged helix family.
 
     0.698
Cphy_3702
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_3172 protein of unknown function DUF214.
 
   0.598
Cphy_3863
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1189 ABC transporter related protein.
 
 
   
0.584
Cphy_1027
PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease.
  
   0.566
Cphy_2589
PFAM: protein of unknown function DUF214; KEGG: efa:EF1321 permease domain protein.
 
 
 0.554
Cphy_3104
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: spi:MGAS10750_Spy0250 oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
    
0.552
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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