STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2108Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase. (806 aa)    
Predicted Functional Partners:
Cphy_3158
Alpha-glucuronidase; PFAM: glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; KEGG: bha:BH1061 alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.797
Cphy_3207
PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y.
 
   
 0.797
Cphy_3618
PFAM: glycoside hydrolase family 43; KEGG: bad:BAD_0301 pyridine nucleotide-disulphide oxidoreductase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.787
Cphy_2105
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: bay:RBAM_033790 XynA; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.759
Cphy_1071
PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; Carbohydrate binding family 6; KEGG: chu:CHU_0353 CHU large protein; candidate b-mannanase, glycoside hydrolase family 26 protein; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.751
Cphy_3080
KEGG: bsu:BG12861 hypothetical protein.
 
   
 0.750
Cphy_3586
Arabinogalactan endo-1,4-beta-galactosidase; PFAM: Ricin B lectin; glycosyl hydrolase 53 domain protein; KEGG: eca:ECA0852 putative exported plant proteoglycan hydrolase.
  
     0.738
Cphy_2632
PFAM: glycoside hydrolase family 43; KEGG: bvu:BVU_1983 glycoside hydrolase family 43, candidate beta-xylosidase/alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.734
Cphy_2276
Mannan endo-1,4-beta-mannosidase; PFAM: glycoside hydrolase family 26; Carbohydrate binding family 6; KEGG: cth:Cthe_2811 glycoside hydrolase, family 26; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.730
Cphy_3202
Cellulase; PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B).
 
   
 0.727
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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