STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2111Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: btl:BALH_2993 transcriptional regulator. (380 aa)    
Predicted Functional Partners:
Cphy_2112
KEGG: cth:Cthe_1537 hypothetical protein.
 
     0.915
Cphy_2114
KEGG: cth:Cthe_1535 hypothetical protein.
 
     0.913
Cphy_2113
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1536 ABC transporter related protein.
 
     0.864
Cphy_0275
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mla:Mlab_0650 hypothetical protein.
  
     0.466
Cphy_0169
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bay:RBAM_012510 Xre.
 
     0.454
Cphy_2079
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_0540 protein of unknown function DUF214.
  
    0.450
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.