STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2114KEGG: cth:Cthe_1535 hypothetical protein. (256 aa)    
Predicted Functional Partners:
Cphy_2112
KEGG: cth:Cthe_1537 hypothetical protein.
 
    0.978
Cphy_2113
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1536 ABC transporter related protein.
 
 
 0.969
Cphy_2111
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: btl:BALH_2993 transcriptional regulator.
 
     0.910
Cphy_2269
KEGG: csc:Csac_2415 hypothetical protein.
  
 
 0.618
Cphy_0114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0410 ABC-type multidrug transport system, ATPase component.
 
 
 0.528
Cphy_0451
Hypothetical protein; KEGG: tet:TTHERM_00245510 Phage tail fiber repeat family protein Pfam: Drf_FH1 PROSITE: ASN_RICH HIS_RICH THR_RICH.
 
    0.521
Cphy_0359
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3668 ABC transporter related.
 
 
 0.517
Cphy_3904
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component.
 
 
 0.513
Cphy_1225
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_1042 probable ATP binding protein of ABC transporter.
 
 
 0.511
Cphy_0680
KEGG: ctc:CTC00666 hypothetical protein.
  
    0.507
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.