STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2120KEGG: cth:Cthe_1850 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Cphy_2119
PFAM: cytochrome c biogenesis protein transmembrane region; Heavy metal transport/detoxification protein; KEGG: cth:Cthe_1849 heavy metal transport/detoxification protein.
 
     0.892
Cphy_2122
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_1494 predicted sensory transduction histidine kinase.
 
     0.749
Cphy_2079
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_0540 protein of unknown function DUF214.
  
    0.525
Cphy_2121
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1847 two component transcriptional regulator, winged helix family.
 
     0.519
Cphy_0192
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: ppe:PEPE_1650 ABC-type antimicrobial peptide transport system, ATPase component.
  
    0.512
Cphy_1857
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: blo:BL1369 large protein with N-terminal similarity to ATP binding protein of ABC transporter.
  
    0.512
Cphy_3221
PFAM: Domain of unknown function DUF1801; KEGG: lbl:LBL_1943 hypothetical protein.
  
     0.506
Cphy_2411
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein.
  
     0.482
Cphy_2164
Hypothetical protein.
  
     0.460
Cphy_3365
PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58.
  
     0.449
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.