STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2124PFAM: oxidoreductase domain protein; aspartate dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: pha:PSHAb0019 putative dinucleotide-utilizing enzyme. (261 aa)    
Predicted Functional Partners:
Cphy_2125
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bvu:BVU_0072 lactate dehydrogenase and related dehydrogenase.
 
   
 0.898
Cphy_3413
TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: lac:LBA1687 L-asparaginase.
  
  
  0.827
argG
PFAM: argininosuccinate synthase; KEGG: cth:Cthe_0179 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 
  0.805
Cphy_2751
PFAM: aspartate transcarbamylase regulatory subunit; KEGG: ckl:CKL_3360 PyrI.
    
  0.803
pyrB
KEGG: cbf:CLI_3380 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
  0.800
Cphy_2936
KEGG: cth:Cthe_0556 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase.
     
  0.800
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
  0.800
asnA
PFAM: aspartate--ammonia ligase; KEGG: amt:Amet_4660 aspartate--ammonia ligase.
     
  0.800
Cphy_3530
PFAM: aminotransferase class I and II; KEGG: dsy:DSY1222 hypothetical protein.
     
  0.800
Cphy_2126
PFAM: pentapeptide repeat protein; KEGG: mba:Mbar_A3729 hypothetical protein.
       0.562
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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