STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2136PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0677 ABC transporter ATP-binding component. (333 aa)    
Predicted Functional Partners:
Cphy_2137
ABC-type multidrug transport system ATPase and permease components-like protein; KEGG: lsa:LSA1148 putative multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits.
 
   0.996
Cphy_2135
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: spd:SPD_1621 ABC transporter, ATP-binding/permease protein.
 
  
0.980
Cphy_0100
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2817 ABC transporter, ATP-binding/permease protein.
 
  
0.939
Cphy_1238
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3148 ABC transporter related protein.
 
  
0.921
Cphy_2138
PFAM: regulatory protein MarR; KEGG: cbe:Cbei_0048 transcriptional regulator, TrmB.
 
   
 0.850
Cphy_1056
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
  
0.618
Cphy_2200
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE1062 ABC transporter, ATP-binding protein, HlyB family.
 
  
0.553
Cphy_1055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
  
0.534
Cphy_3116
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpr:CPR_0817 antibiotic ABC transporter, ATP-binding protein.
 
 
  
0.512
Cphy_0017
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE1525 probable ABC transporter.
 
 
  
0.509
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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