STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2137ABC-type multidrug transport system ATPase and permease components-like protein; KEGG: lsa:LSA1148 putative multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits. (250 aa)    
Predicted Functional Partners:
Cphy_2136
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0677 ABC transporter ATP-binding component.
 
   0.995
Cphy_2135
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: spd:SPD_1621 ABC transporter, ATP-binding/permease protein.
     0.963
Cphy_2138
PFAM: regulatory protein MarR; KEGG: cbe:Cbei_0048 transcriptional regulator, TrmB.
 
   
 0.886
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
 
 0.442
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
    
 0.438
Cphy_3117
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: tde:TDE0032 histidine kinase-related ATPase, putative.
  
     0.435
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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