STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2142KEGG: tde:TDE0186 hypothetical protein. (445 aa)    
Predicted Functional Partners:
Cphy_2143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tde:TDE0183 ABC transporter, permease protein.
  
 
 0.971
Cphy_2139
PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1588 extracellular solute-binding protein, family 1.
    
  0.926
Cphy_2144
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.923
Cphy_3025
PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP1499 related to glycerol-3-phosphate transporter.
  
  
 0.528
Cphy_2140
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cth:Cthe_1585 signal transduction histidine kinase, LytS.
   
   0.496
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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