STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2161PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3240 cupin 2, conserved barrel domain protein. (152 aa)    
Predicted Functional Partners:
Cphy_2160
Hypothetical protein.
       0.714
Cphy_2162
PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12825 hypothetical protein.
 
     0.604
Cphy_2159
KEGG: bha:BH1891 hypothetical protein.
       0.526
Cphy_1756
PFAM: cyclase family protein; KEGG: ctc:CTC01896 putative polyketide cyclase.
  
    0.500
Cphy_1894
PFAM: cyclase family protein; KEGG: gur:Gura_0174 cyclase family protein.
  
    0.500
Cphy_0657
PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family.
  
    0.498
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
 
     0.496
Cphy_1662
PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3138 cupin 2, conserved barrel domain protein.
 
   
 0.480
Cphy_2158
KEGG: cdf:CD0664B hypothetical protein.
       0.477
Cphy_1513
PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family.
  
    0.465
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.