STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2164Hypothetical protein. (205 aa)    
Predicted Functional Partners:
Cphy_2165
KEGG: cbe:Cbei_3228 hypothetical protein.
 
     0.901
Cphy_0780
KEGG: cbe:Cbei_3228 hypothetical protein.
 
     0.690
Cphy_3235
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein.
  
     0.602
Cphy_1213
Capsular exopolysaccharide family; KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
    
 
 0.601
Cphy_2162
PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12825 hypothetical protein.
 
    0.580
Cphy_0676
Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family.
  
     0.576
Cphy_3264
PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC3086 protein containing cell adhesion domain.
  
   
 0.574
Cphy_2411
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein.
 
     0.557
Cphy_3310
Hypothetical protein; KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2; Belongs to the glycosyl hydrolase 28 family.
  
     0.557
Cphy_0657
PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family.
  
     0.542
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.