STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2167KEGG: pth:PTH_1521 hypothetical protein. (83 aa)    
Predicted Functional Partners:
Cphy_2168
Hypothetical protein.
       0.773
Cphy_3219
PFAM: transcription activator effector binding; KEGG: cac:CAC0426 transcriptional regulator (HTH_ARAC-domain).
  
     0.764
Cphy_3138
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC-family transcriptional regulator.
  
     0.762
Cphy_3174
Transcriptional regulator, AraC family; PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2042 transcription activator, effector binding.
  
     0.762
Cphy_2107
Transcriptional regulator, AraC family; PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0594 transcriptional regulator (AraC/XylS family).
  
     0.760
Cphy_3181
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: dsy:DSY1233 hypothetical protein.
  
     0.758
Cphy_0674
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BG12132 similar to transcriptional regulator (AraC/XylS family).
  
     0.730
Cphy_3220
Hypothetical protein; KEGG: cdf:CD1883 AraC-family transcriptional regulator.
  
     0.700
Cphy_0165
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: ctc:CTC01432 transcriptional regulatory protein.
  
     0.525
Cphy_1472
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_3990 transcription activator, effector binding.
  
     0.473
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.