STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2176KEGG: bca:BCE_A0177 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Cphy_2177
KEGG: bca:BCE_A0176 hypothetical protein.
       0.755
Cphy_0827
PFAM: Spore germination protein; KEGG: ctc:CTC01778 spore germination protein KB.
  
     0.671
Cphy_0828
Hypothetical protein; KEGG: ctc:CTC01777 spore germination protein KC.
  
     0.481
Cphy_0451
Hypothetical protein; KEGG: tet:TTHERM_00245510 Phage tail fiber repeat family protein Pfam: Drf_FH1 PROSITE: ASN_RICH HIS_RICH THR_RICH.
  
     0.464
Cphy_2984
KEGG: drm:Dred_2613 superfamily II helicase and inactivated derivatives-like protein.
  
     0.437
Cphy_0564
Negative regulator of genetic competence sporulation and motility-like protein; KEGG: sak:SAK_0197 adaptor protein.
  
     0.432
Cphy_0452
KEGG: cbf:CLI_0630 hypothetical protein.
  
     0.423
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.