STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2209KEGG: bha:BH1891 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Cphy_2843
PFAM: response regulator receiver; CheW domain protein; KEGG: amt:Amet_2732 putative CheW protein.
  
 
 0.850
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.701
Cphy_1027
PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease.
  
     0.580
Cphy_2283
KEGG: plu:plu1458 unnamed protein product; similar to streptomycin adenyltransferase.
  
     0.520
Cphy_3389
PFAM: Formamidopyrimidine-DNA glycolase, H2TH DNA binding; KEGG: pdi:BDI_2011 formamidopyrimidine-DNA glycosylase.
  
     0.516
Cphy_2690
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases.
  
 
 0.508
Cphy_2944
KEGG: dsy:DSY4643 hypothetical protein.
  
     0.485
Cphy_2210
KEGG: ldb:Ldb0968 hypothetical protein.
       0.471
Cphy_2411
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein.
 
    0.460
Cphy_3330
KEGG: cdf:CD3324 hypothetical protein.
  
     0.455
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.