STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2214TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose dehydrogenase. (439 aa)    
Predicted Functional Partners:
Cphy_3504
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD.
  
 
 0.934
Cphy_3502
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: fps:FP1285 FnlC protein involved in UDP-L-FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis) probable UDP-2-acetamino-2,6-dideoxy-L-talose 2-epimerase.
 
  
 0.923
Cphy_2212
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: msm:MSMEG_0476 chitin synthase.
 
     0.684
Cphy_2213
PFAM: polysaccharide deacetylase; KEGG: cdf:CD2598 putative oligosaccharide deacetylase.
 
    0.672
Cphy_1201
KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.669
Cphy_3542
KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.669
Cphy_2211
KEGG: lbu:LBUL_0835 hypothetical protein.
 
    0.651
Cphy_1211
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mla:Mlab_0897 hypothetical protein.
 
  
 0.640
Cphy_2210
KEGG: ldb:Ldb0968 hypothetical protein.
 
     0.601
Cphy_3351
PFAM: glycosyl transferase family 4; KEGG: tde:TDE2249 phospho-N-acetylmuramoyl-pentapeptide-transferase.
  
  
 0.595
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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