STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2215PFAM: Chloramphenicol phosphotransferase family protein; KEGG: ppr:PBPRA2780 hypothetical protein. (176 aa)    
Predicted Functional Partners:
Cphy_2216
KEGG: bat:BAS2739 hypothetical protein.
       0.645
Cphy_1799
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: sco:SCO5003 chinitase A precursor; Belongs to the glycosyl hydrolase 18 family.
  
     0.618
Cphy_3139
Hypothetical protein.
  
     0.583
Cphy_3309
PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase.
  
     0.549
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
     0.546
Cphy_1882
SMART: Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein.
  
     0.521
Cphy_1943
Chitinase; PFAM: glycoside hydrolase family 19; KEGG: ath:AT1G02360 chitinase, putative.
  
     0.506
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
  
     0.499
Cphy_1873
PFAM: Carbohydrate binding family 6; APHP domain protein; SMART: cellulose binding type IV; Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein.
  
     0.491
Cphy_1063
Conserved hypothetical protein; KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase.
  
     0.445
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.