STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2225KEGG: cbe:Cbei_2683 alpha/beta superfamily hydrolase. (230 aa)    
Predicted Functional Partners:
Cphy_0780
KEGG: cbe:Cbei_3228 hypothetical protein.
  
     0.570
Cphy_2226
KEGG: tte:TTE1718 thiol-disulfide isomerase and thioredoxins.
       0.551
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.513
Cphy_0491
PFAM: Ribose/galactose isomerase; KEGG: cbe:Cbei_3370 ribose/galactose isomerase.
   
    0.497
Cphy_2387
PFAM: Ribose/galactose isomerase; KEGG: cac:CAC2606 hypothetical protein.
   
    0.497
Cphy_0439
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1062 Mn2+/Zn2+ ABC transporter, ATP-binding protein.
   
    0.417
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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