STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2237Galactokinase; PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase. (415 aa)    
Predicted Functional Partners:
galT
KEGG: cac:CAC2961 galactose-1-phosphate uridyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein.
 
 
 0.998
Cphy_0556
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 0.988
Cphy_2660
PFAM: Aldose 1-epimerase; KEGG: dge:Dgeo_2023 aldose 1-epimerase.
  
 0.971
Cphy_0571
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: bcy:Bcer98_3965 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.835
Cphy_1166
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cbe:Cbei_4420 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.835
Cphy_0669
UDP-glucose 4-epimerase-like protein; KEGG: bay:RBAM_036080 GalE.
  
 
 0.777
Cphy_1188
Peptidase S41; PFAM: TPR repeat-containing protein; peptidase S41; RDD domain containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_2680 peptidase S41.
   
 
 0.750
atpD-3
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
   0.732
Cphy_2535
PFAM: Aldose 1-epimerase; KEGG: tva:TVAG_202440 Aldose 1-epimerase family protein Pfam: Aldose_epim.
  
 
 0.728
Cphy_2238
Hypothetical protein.
       0.723
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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