Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2258PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: amt:Amet_0953 N-acetylmuramoyl-L-alanine amidase. (876 aa)    
Predicted Functional Partners:
Cphy_0042
PFAM: Rhomboid family protein; KEGG: ctc:CTC00530 conserved membrane protein (rhomboid family).
   
   0.732
Cphy_2257
PFAM: protein of unknown function DUF187; KEGG: btk:BT9727_0818 conserved hypothetical protein and possible S-layer protein fusion.
 
     0.597
Cphy_2842
Hypothetical protein; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, putative Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH.
  
     0.533
Cphy_3891
PFAM: cyclic nucleotide-binding; KEGG: swo:Swol_0580 hypothetical protein.
  
     0.522
Cphy_2259
PFAM: PP-loop domain protein; KEGG: cth:Cthe_2181 predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Belongs to the TtcA family.
       0.470
Cphy_3607
PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase.
 
  
 0.434
Cphy_0460
Hypothetical protein; KEGG: mst:Msp_1095 DNA double-strand break repair protein Rad50.
  
     0.413
Cphy_3851
Hypothetical protein; KEGG: pfa:PF11_0507 antigen 332.
 
   
 0.410
Cphy_0935
HD superfamily phosphohydrolase-like protein; KEGG: abu:Abu_1539 conserved hypothetical protein.
  
     0.409
Cphy_0880
PFAM: NUDIX hydrolase; KEGG: ecs:ECs3139 hypothetical protein.
  
     0.405
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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