STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2269KEGG: csc:Csac_2415 hypothetical protein. (869 aa)    
Predicted Functional Partners:
Cphy_2268
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2414 binding-protein-dependent transport systems inner membrane component.
 
     0.948
Cphy_2267
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2413 binding-protein-dependent transport systems inner membrane component.
 
     0.933
Cphy_2265
PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1046 extracellular solute-binding protein, family 1.
 
     0.866
Cphy_2274
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein, family 1.
 
     0.800
Cphy_2273
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component.
 
     0.793
Cphy_2272
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component.
  
     0.756
Cphy_2730
PFAM: polysaccharide deacetylase; KEGG: cac:CAC0358 predicted xylanase/chitin deacetylase.
  
     0.741
Cphy_1549
Hypothetical protein; KEGG: efa:EF1234 ABC transporter, substrate-binding protein, putative.
  
     0.566
Cphy_2266
Hypothetical protein.
       0.475
Cphy_0531
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_1271 carbohydrate binding family 6; Belongs to the glycosyl hydrolase 43 family.
  
     0.473
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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