STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2275KEGG: tte:TTE1959 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Cphy_2274
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein, family 1.
  
    0.775
Cphy_2273
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component.
  
    0.733
Cphy_2272
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component.
  
    0.700
Cphy_2276
Mannan endo-1,4-beta-mannosidase; PFAM: glycoside hydrolase family 26; Carbohydrate binding family 6; KEGG: cth:Cthe_2811 glycoside hydrolase, family 26; Belongs to the glycosyl hydrolase 26 family.
       0.603
Cphy_3288
KEGG: csc:Csac_1712 hypothetical protein.
  
     0.556
Cphy_2930
Hypothetical protein.
  
     0.544
Cphy_3931
Hypothetical protein.
  
     0.503
Cphy_3849
Hypothetical protein; KEGG: lbl:LBL_1556 endoflagellar biosynthesis chaperone.
  
     0.480
Cphy_3851
Hypothetical protein; KEGG: pfa:PF11_0507 antigen 332.
  
    0.479
Cphy_0458
Hypothetical protein.
  
     0.467
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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