STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2291PFAM: peptidase U32; KEGG: amt:Amet_2471 peptidase U32. (426 aa)    
Predicted Functional Partners:
Cphy_2292
PFAM: O-methyltransferase family 3; KEGG: cbh:CLC_2427 O-methyltransferase family protein.
 
  
 0.902
Cphy_2293
Hypothetical protein.
  
    0.569
rnj
Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.544
Cphy_0408
KEGG: cno:NT01CX_1004 radical SAM protein, TIGR01212 family; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    0.436
Cphy_1307
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold.
  
     0.432
Cphy_1733
KEGG: cth:Cthe_3021 Ech hydrogenase, subunit EchD, putative.
   
   0.406
Cphy_1345
PFAM: prephenate dehydratase; Chorismate mutase; KEGG: ckl:CKL_0789 PheA.
 
   
 0.405
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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