STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2322PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bvu:BVU_2307 putative GFO/IDH/MocA-family oxidoreductase. (320 aa)    
Predicted Functional Partners:
Cphy_2739
PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase.
 
  
 0.585
Cphy_0227
PFAM: PfkB domain protein; KEGG: amt:Amet_1262 PfkB domain protein.
 
  
 0.571
Cphy_2237
Galactokinase; PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase.
  
 
 0.448
Cphy_0466
PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_4405 oxidoreductase domain protein.
  
     0.447
Cphy_0124
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5936 xylose isomerase domain protein TIM barrel.
  
  
 0.436
Cphy_0955
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: fnu:FN1967 hypothetical protein.
  
  
 0.436
Cphy_1537
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ctc:CTC00693 conserved protein, endonuclease-like.
  
  
 0.436
Cphy_2729
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cbe:Cbei_0450 xylose isomerase domain protein TIM barrel.
  
  
 0.436
Cphy_0958
PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_0729 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  
 0.434
Cphy_2418
PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_2282 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  
 0.434
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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