STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2323KEGG: ckl:CKL_3502 predicted penicillin binding protein. (72 aa)    
Predicted Functional Partners:
Cphy_2324
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: dsy:DSY0731 hypothetical protein.
 
  
 0.966
Cphy_2354
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: cdf:CD0547 putative penicillin-binding protein repressor.
 
  
 0.878
Cphy_2069
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: dsy:DSY3483 hypothetical protein.
 
  
 0.705
Cphy_2068
PFAM: peptidase M56 BlaR1; KEGG: dsy:DSY3484 hypothetical protein.
  
     0.641
Cphy_2325
KEGG: cbe:Cbei_2116 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.487
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.