STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2341PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gka:GK0615 exo-alpha-1,4-glucosidase. (554 aa)    
Predicted Functional Partners:
Cphy_2342
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cbe:Cbei_0735 alpha amylase, catalytic region.
 
  
 
0.947
Cphy_2350
Alpha amylase catalytic region; PFAM: glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gtn:GTNG_0610 neopullulanase; Belongs to the glycosyl hydrolase 13 family.
 
 
0.945
Cphy_2344
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: llm:llmg_0743 alpha-amylase.
 
  
 
0.938
Cphy_2349
KEGG: ftw:FTW_1655 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.
  
 
 0.931
Cphy_1937
PFAM: glycoside hydrolase family 1; KEGG: tde:TDE1882 glycosyl hydrolase, family 1; Belongs to the glycosyl hydrolase 1 family.
 
 
 0.927
Cphy_1936
PFAM: glycoside hydrolase clan GH-D; KEGG: tde:TDE1453 alpha-galactosidase.
  
 
 0.920
Cphy_3056
PFAM: glycoside hydrolase clan GH-D; KEGG: csc:Csac_1118 glycoside hydrolase, clan GH-D.
  
 
 0.920
Cphy_3314
Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: cac:CAC2685 trehalose/maltose hydrolase (phosphorylase).
  
 
 0.911
Cphy_1934
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_2428 alpha amylase, catalytic region.
  
  
 
0.910
Cphy_3785
Alpha-glucosidase; PFAM: glycoside hydrolase family 31; KEGG: cpf:CPF_2648 glycosyl hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.908
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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