STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2344PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: llm:llmg_0743 alpha-amylase. (575 aa)    
Predicted Functional Partners:
Cphy_2331
Pullulanase, type I; KEGG: cpe:CPE1552 pullulanase; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 0.981
Cphy_2304
KEGG: cbe:Cbei_4135 pullulanase, type I; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; pullanase-associated protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 0.968
Cphy_2348
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 
 0.954
Cphy_2350
Alpha amylase catalytic region; PFAM: glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gtn:GTNG_0610 neopullulanase; Belongs to the glycosyl hydrolase 13 family.
 
 
0.950
Cphy_2349
KEGG: ftw:FTW_1655 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.
 
 0.944
Cphy_2342
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cbe:Cbei_0735 alpha amylase, catalytic region.
 
  
 
0.942
Cphy_2341
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gka:GK0615 exo-alpha-1,4-glucosidase.
 
  
 
0.938
Cphy_1934
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_2428 alpha amylase, catalytic region.
  
  
 
0.927
Cphy_3314
Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: cac:CAC2685 trehalose/maltose hydrolase (phosphorylase).
  
 
 0.911
Cphy_3785
Alpha-glucosidase; PFAM: glycoside hydrolase family 31; KEGG: cpf:CPF_2648 glycosyl hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.908
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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