Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2351PFAM: regulatory protein LacI; KEGG: bha:BH3692 transcriptional regulator. (331 aa)    
Predicted Functional Partners:
Cphy_0484
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0393 KDG operon repressor (gene kdgR), LacI family.
  
     0.773
Cphy_0595
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0161 catabolite control protein A.
  
     0.773
Cphy_1821
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0201 Transcriptional regulator.
  
     0.773
Cphy_3585
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: oih:OB2557 transcriptional regulator.
  
     0.773
Cphy_2278
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_3881 regulatory protein, LacI.
  
     0.765
Cphy_1454
PFAM: regulatory protein LacI; KEGG: cpf:CPF_1547 transcriptional regulator, LacI family.
  
     0.750
Cphy_1060
PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: smd:Smed_5753 regulatory protein LacI.
 
    0.734
Cphy_1012
PFAM: regulatory protein GntR HTH; KEGG: gtn:GTNG_1824 transcriptional regulator.
  
     0.718
Cphy_2350
Alpha amylase catalytic region; PFAM: glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gtn:GTNG_0610 neopullulanase; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.601
Cphy_2352
KEGG: cbe:Cbei_4207 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.
   
   0.480
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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