STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2377KEGG: tte:TTE0895 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Cphy_2376
PFAM: DNA repair protein RadC; KEGG: cbh:CLC_2900 DNA repair protein, RadC family; Belongs to the UPF0758 family.
       0.699
Cphy_2375
PFAM: cell shape determining protein MreB/Mrl; KEGG: cbf:CLI_3056 rod shape-determining protein MreB.
       0.571
Cphy_0026
KEGG: tte:TTE0043 hypothetical protein.
  
     0.556
Cphy_0177
PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein.
  
     0.540
Cphy_2374
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.488
Cphy_2378
Aluminium resistance family protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Aluminium resistance family protein; KEGG: cth:Cthe_0794 aluminium resistance protein.
       0.485
Cphy_2372
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: csc:Csac_1869 peptidoglycan glycosyltransferase.
       0.469
Cphy_2373
KEGG: cth:Cthe_0090 hypothetical protein.
       0.469
Cphy_0223
PFAM: protein of unknown function DUF1292; KEGG: amt:Amet_0705 protein of unknown function DUF1292.
  
     0.461
Cphy_3409
PFAM: extracellular solute-binding protein family 1; KEGG: tte:TTE2345 sugar-binding periplasmic proteins/domains.
  
    0.461
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.