Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2411PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Cphy_3235
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein.
 
  
 0.810
Cphy_2165
KEGG: cbe:Cbei_3228 hypothetical protein.
  
     0.698
Cphy_3310
Hypothetical protein; KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2; Belongs to the glycosyl hydrolase 28 family.
  
    0.672
Cphy_3309
PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase.
  
     0.604
Cphy_3139
Hypothetical protein.
 
     0.579
Cphy_2553
KEGG: mac:MA2899 hypothetical protein.
  
     0.577
Cphy_3626
Chloramphenicol 3-O-phosphotransferase-like protein; KEGG: mlo:mll3789 weak similarity to chloramphenicol phosphotransferase.
  
     0.569
Cphy_2164
Hypothetical protein.
 
     0.557
Cphy_1866
KEGG: rci:RCIX1074 hypothetical protein.
  
     0.526
Cphy_3317
PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV1727 putative sugar-binding lipoprotein precursor.
  
     0.513
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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