STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2415KEGG: sma:SAV6238 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Cphy_3133
PFAM: NUDIX hydrolase; KEGG: mac:MA1648 MutT/NUDIX family protein.
 
     0.647
Cphy_0152
tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
   
    0.605
Cphy_2123
SMART: transglutaminase domain protein; KEGG: ssa:SSA_0384 hypothetical protein.
  
     0.487
Cphy_2414
Hypothetical protein; KEGG: pto:PTO0127 transporter.
       0.473
Cphy_2413
Hypothetical protein.
       0.461
Cphy_0398
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bca:BCE_1902 oxidoreductase family protein.
  
     0.429
Cphy_2411
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein.
 
     0.423
Cphy_2162
PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12825 hypothetical protein.
  
     0.422
Cphy_3235
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein.
  
     0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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