STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2417PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_1070 acetyltransferase, GNAT family. (282 aa)    
Predicted Functional Partners:
Cphy_2416
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: cac:CAC0851 ortholog YgiD E.coli.
 
     0.511
Cphy_2418
PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_2282 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.472
Cphy_1979
PFAM: regulatory protein MarR; KEGG: cbf:CLI_2873 transcriptional regulator, MarR family.
  
     0.470
Cphy_0397
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sco:SCO0663 2-hydroxyacid-family dehydrogenase.
  
    0.428
Cphy_1465
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ckl:CKL_0436 SerA.
  
    0.428
Cphy_3382
PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dsy:DSY4683 hypothetical protein.
  
    0.428
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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